8 research outputs found

    Closed Terminologies and Temporal Reasoning in Description Logic for Concept and Plan Recognition

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    Description logics are knowledge representation formalisms in the tradition of frames and semantic networks, but with an emphasis on formal semantics. A terminology contains descriptions of concepts, such as UNIVERSITY, which are automatically classified ina taxonomy via subsumption inferences. Individuals such as COLUMBIA are described in terms of those concepts. This thesis enhances the scope and utility of description logics by exploiting new completeness assumptions during problem solving and by extending the expressiveness of descriptions. First, we introduce a predictive concept recognition methodology based on a new closed terminology assumption (CTA). The terminology is dynamically partitioned by modalities (necessary, optional, and impossible) with respect to individuals as they are specified. In our interactive configuration application, a user incrementally specifies an individual computer system and its components in collaboration with a configuration engine. Choices can be made in any order and at any level of abstraction. We distinguish between abstract and concrete concepts to formally define when an individual's description may be considered finished. We also exploit CTA, together with the terminology's subsumption-based organization, to efficiently track the types of systems and components consistent with current choices, infer additional constraints on current choices, and appropriately restrict future choices. Thus, we can help focus the efforts of both user and configuration engine. This work is implemented in the K-REP system. Second, we show that a new class of complex descriptions can be formed via constraint networks over standard descriptions. For example, we model plans as constraint networks whose nodes represent actions.Arcs represent qualitative and metric temporal constraints, plusco-reference constraints, between actions. By combining terminological reasoning with constraint satisfaction techniques, subsumption is extended to constraint networks, allowing automatic classification of a plan library. This work is implemented in the T-REX system, which integrates and builds upon an existing description logic system (K-REP or CLASSIC) and temporal reasoner (MATS). Finally, we combine the preceding, orthogonal results to conduct predictive recognition of constraint network concepts. As an example,this synthesis enables a new approach to deductive plan recognition,illustrated with travel plans. This work is also realized in T-REX

    Reporting guidelines for human microbiome research: the STORMS checklist

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    The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results. The STORMS tool provides guidance for concise and complete reporting of microbiome studies to facilitate manuscript preparation, peer review, reader comprehension of publications, and comparative analysis of published results
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